Software

When a user submits an amino acid sequence, the server first tries to retrieve template proteins of similar folds (or super-secondary structures) from the PDB library by LOMETS (Local Meta-Threading-Server)....

'Genephony is an online tool for the manipulation of large datasets of genomic information. It can be used as a browser for genomic data, as a high-throughput annotation tool, and...

*Interpret next generation sequencing results *Identify & Prioritize genes and variants according to their relevance to diseases and phenotypes of interest *Explore relationships between genes and gene variants and selected...

"HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data." - from the website. ...

"a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution." - from the website Workflow available...

"LDA Effect Size (LEfSe) (Segata et. al 2010) is an algorithm for high-dimensional biomarker discovery and explanation that identifies genomic features (genes, pathways, or taxa) characterizing the differences between two...

"eXtasy is a pipeline for ranking nonsynonymous single nucleotide variants given a specific phenotype" - from the eXtasy website.

"Candidate genes prioritization through genomic data fusion" - from the Endeavour website

"SPANR addresses a key unmet challenge in genomics research, which is to ascertain how single nucleotide variations (SNVs) cause splicing misregulation and may lead to disease. Unlike any other approach,...

UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational...